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RESULTS SUMMARY
View List of Contigs


  Total sequences analysed = 17590

  Sequences sorted into 3003 contigs and 0 singletons

  Total SNPs detected = 24948

  Total consensus size = 2534368 bp

  SNP frequency = 0.98/100 bp

  Smallest contig = 2 sequences

  Total transitions = 9945

  Total transversions = 10175

  Total indels = 4828

  1333 contigs containing 2 sequences

    1129(84.70)% of these contigs contain snps

    with a total of 8872 snps

  583 contigs containing 3 sequences

    547(93.83)% of these contigs contain snps

    with a total of 7438 snps

  308 contigs containing 4 sequences

    294(95.45)% of these contigs contain snps

    with a total of 6049 snps

  174 contigs containing 5 sequences

    85(48.85)% of these contigs contain snps

    with a total of 344 snps

  125 contigs containing 6 sequences

    88(70.40)% of these contigs contain snps

    with a total of 477 snps

  83 contigs containing 7 sequences

    23(27.71)% of these contigs contain snps

    with a total of 62 snps

  68 contigs containing 8 sequences

    31(45.59)% of these contigs contain snps

    with a total of 153 snps

  28 contigs containing 9 sequences

    6(21.43)% of these contigs contain snps

    with a total of 11 snps

  33 contigs containing 10 sequences

    15(45.45)% of these contigs contain snps

    with a total of 35 snps

  36 contigs containing 11 sequences

    16(44.44)% of these contigs contain snps

    with a total of 82 snps

  34 contigs containing 12 sequences

    20(58.82)% of these contigs contain snps

    with a total of 76 snps

  13 contigs containing 13 sequences

    2(15.38)% of these contigs contain snps

    with a total of 17 snps

  16 contigs containing 14 sequences

    7(43.75)% of these contigs contain snps

    with a total of 39 snps

  17 contigs containing 15 sequences

    11(64.71)% of these contigs contain snps

    with a total of 28 snps

  5 contigs containing 16 sequences

    3(60.00)% of these contigs contain snps

    with a total of 8 snps

  10 contigs containing 17 sequences

    4(40.00)% of these contigs contain snps

    with a total of 15 snps

  11 contigs containing 18 sequences

    2(18.18)% of these contigs contain snps

    with a total of 8 snps

  12 contigs containing 19 sequences

    6(50.00)% of these contigs contain snps

    with a total of 23 snps

  6 contigs containing 20 sequences

    5(83.33)% of these contigs contain snps

    with a total of 13 snps

  9 contigs containing 21 sequences

    4(44.44)% of these contigs contain snps

    with a total of 22 snps

  4 contigs containing 22 sequences

    3(75.00)% of these contigs contain snps

    with a total of 7 snps

  7 contigs containing 23 sequences

    3(42.86)% of these contigs contain snps

    with a total of 23 snps

  3 contigs containing 24 sequences

    2(66.67)% of these contigs contain snps

    with a total of 19 snps

  6 contigs containing 25 sequences

    5(83.33)% of these contigs contain snps

    with a total of 28 snps

  4 contigs containing 26 sequences

    3(75.00)% of these contigs contain snps

    with a total of 18 snps

  3 contigs containing 27 sequences

    2(66.67)% of these contigs contain snps

    with a total of 2 snps

  4 contigs containing 28 sequences

    4(100.00)% of these contigs contain snps

    with a total of 15 snps

  1 contigs containing 29 sequences

    1(100.00)% of these contigs contain snps

    with a total of 14 snps

  3 contigs containing 30 sequences

    1(33.33)% of these contigs contain snps

    with a total of 2 snps

  2 contigs containing 31 sequences

    2(100.00)% of these contigs contain snps

    with a total of 3 snps

  3 contigs containing 32 sequences

    3(100.00)% of these contigs contain snps

    with a total of 28 snps

  1 contigs containing 33 sequences

    1(100.00)% of these contigs contain snps

    with a total of 18 snps

  2 contigs containing 34 sequences

    2(100.00)% of these contigs contain snps

    with a total of 31 snps

  3 contigs containing 35 sequences

    3(100.00)% of these contigs contain snps

    with a total of 8 snps

  4 contigs containing 36 sequences

    4(100.00)% of these contigs contain snps

    with a total of 10 snps

  2 contigs containing 37 sequences

    2(100.00)% of these contigs contain snps

    with a total of 8 snps

  2 contigs containing 39 sequences

    2(100.00)% of these contigs contain snps

    with a total of 19 snps

  2 contigs containing 40 sequences

    2(100.00)% of these contigs contain snps

    with a total of 11 snps

  3 contigs containing 41 sequences

    3(100.00)% of these contigs contain snps

    with a total of 20 snps

  2 contigs containing 42 sequences

    2(100.00)% of these contigs contain snps

    with a total of 11 snps

  2 contigs containing 43 sequences

    2(100.00)% of these contigs contain snps

    with a total of 9 snps

  1 contigs containing 44 sequences

    1(100.00)% of these contigs contain snps

    with a total of 30 snps

  2 contigs containing 47 sequences

    2(100.00)% of these contigs contain snps

    with a total of 29 snps

  1 contigs containing 48 sequences

    1(100.00)% of these contigs contain snps

    with a total of 9 snps

  1 contigs containing 51 sequences

    1(100.00)% of these contigs contain snps

    with a total of 15 snps

  1 contigs containing 52 sequences

    1(100.00)% of these contigs contain snps

    with a total of 9 snps

  1 contigs containing 53 sequences

    1(100.00)% of these contigs contain snps

    with a total of 4 snps

  1 contigs containing 55 sequences

    1(100.00)% of these contigs contain snps

    with a total of 4 snps

  1 contigs containing 57 sequences

    1(100.00)% of these contigs contain snps

    with a total of 6 snps

  1 contigs containing 59 sequences

    1(100.00)% of these contigs contain snps

    with a total of 2 snps

  1 contigs containing 60 sequences

    1(100.00)% of these contigs contain snps

    with a total of 30 snps

  1 contigs containing 63 sequences

    1(100.00)% of these contigs contain snps

    with a total of 16 snps

  1 contigs containing 65 sequences

    1(100.00)% of these contigs contain snps

    with a total of 1 snps

  2 contigs containing 68 sequences

    2(100.00)% of these contigs contain snps

    with a total of 48 snps

  1 contigs containing 71 sequences

    1(100.00)% of these contigs contain snps

    with a total of 13 snps

  1 contigs containing 78 sequences

    1(100.00)% of these contigs contain snps

    with a total of 12 snps

  1 contigs containing 81 sequences

    1(100.00)% of these contigs contain snps

    with a total of 24 snps

  1 contigs containing 82 sequences

    1(100.00)% of these contigs contain snps

    with a total of 37 snps

  1 contigs containing 90 sequences

    1(100.00)% of these contigs contain snps

    with a total of 27 snps

  1 contigs containing 98 sequences

    1(100.00)% of these contigs contain snps

    with a total of 28 snps

  1 contigs containing 100 sequences

    1(100.00)% of these contigs contain snps

    with a total of 50 snps

  1 contigs containing 104 sequences

    1(100.00)% of these contigs contain snps

    with a total of 42 snps

  2 contigs containing 105 sequences

    2(100.00)% of these contigs contain snps

    with a total of 52 snps

  1 contigs containing 133 sequences

    1(100.00)% of these contigs contain snps

    with a total of 60 snps

  1 contigs containing 136 sequences

    1(100.00)% of these contigs contain snps

    with a total of 45 snps

  1 contigs containing 150 sequences

    1(100.00)% of these contigs contain snps

    with a total of 8 snps

  1 contigs containing 154 sequences

    1(100.00)% of these contigs contain snps

    with a total of 32 snps

  1 contigs containing 198 sequences

    1(100.00)% of these contigs contain snps

    with a total of 22 snps

  1 contigs containing 216 sequences

    1(100.00)% of these contigs contain snps

    with a total of 4 snps

  1 contigs containing 254 sequences

    1(100.00)% of these contigs contain snps

    with a total of 68 snps

  1 contigs containing 273 sequences

    1(100.00)% of these contigs contain snps

    with a total of 61 snps

  1 contigs containing 296 sequences

    1(100.00)% of these contigs contain snps

    with a total of 29 snps

  1 contigs containing 303 sequences

    1(100.00)% of these contigs contain snps

    with a total of 11 snps

  1 contigs containing 395 sequences

    1(100.00)% of these contigs contain snps

    with a total of 44 snps


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